You can try to scan for RFID chips used for diagnostic purposes, of for the nodes the cyberware uses to communicate. Cross reference the replies with a database of the responses given to such queries by various types of cyber-hardware, and boom- you've scanned for cyber, the easy way.
Of course, that assume people don't somehow disable such responses. Any cybered runner worth a (used) jack would.
Still, there physical scans, say using milimeter wave radar to peer inside the body, or a high rez MAD scanner. Metal bone lacing would be pretty easy to identify with such a simple physical scan; you'd have metal following the form of the entire skeleton. Similarly, large amounts of abnormal (vat grown) muscle tissue (which is likely much denser than human muscle or otherwise detectable) in all the large muscle groups indicate muscle replacement. Telling the exact grades apart could be tricky, but that's what multiple successes are for. It gets trickier with cyberware where the entire function is neural, or where multiple items are jammed into a small location (eg, telling just which eyemods somebody has), but a cyber scanner could you can tell SOMETHING is there, and then you start asking questions / running other diagnostics.
So yeah, its kind of up to the GM, in terms of how people interpret and what they do with the info they get from a "cyberware scanner". Personally I figure that a good con roll and some decent (false) documentation might let you get away with claiming your wired reflexes were something a bit more legally acceptable, for example. But if you are claiming they are skillwires, you might get asked to slot some chip and demonstrate the (rather obscure) skill on it...
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consider each cyberware has itīs unique design and unique place installed it would most likely not be a tough feat to just cross reference a scan with the countries cyberware black list but I canīt say thatīs fact.
Consider how hard it can be to ID a Car seen at a distance through the rain (analagous to looking at micro-tronics inside the body). Sure, each model of car has "itīs unique design", but people do all kinds of custom mods. No two bodies are quite alike (especially after you load them with other bio and cyberware), so there's likely to be a lot of customization goes into implanting any piece of cyber. Besides, if you are just looking at circuit board shapes and so on, some smart street dock would be sure to slap a plastic and metal casing around illegal cyber to make it look like something else on a scan.