QUOTE (Smokeskin @ Dec 27 2009, 09:13 PM)

Just a simple question, does the skill cap apply before or after specializations, so you can roll 9 dice?
Specialisations are not skill modifiers, they are DP modifiers. As such, they do not interact with the skill cap (modified or natural) in any way.
QUOTE (Page 121 @ Anniversary BBB Reprint)
Specializations add 2 dice to any tests made for that skill when the specialization is applicable to the test.
EDIT: In less coded terminology; You can raise your skill to 6 (7 with Aptitude) even if you have a Specialisation. Specialisations do not count towards modified skill rating, either, so you can stack a Dodge (Ranged) Specialisation with the bonus ranks of Dodge granted by Move-by-Wire or a Reflex Recorder (if you happen to have fewer than 6 ranks in Dodge).
EDIT2: Or the Skill enhancing Adept power.