I dunno, Caine seems to be the only one I've noticed calling it 4.5, maybe he's equating it with D&D 3.5? Even though 4A wasn't supposed to be a new set of rules, just a 20th Anniversary edition with the current 4e rules errata'd...
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But back on topic, SR4.5 didn't just kill plotlines, it murdered them in their sleep. System Failure was a very poor ending to a lot of very good stories.
Cain: I completely disagree. To begin with, at least some of those plotlines GOT endings, instead of just fading away or being forgotten. (Hell, that's what I started Unsolved Mysteries of the Sixth World over..) And I also disagree that many of them actually ended, as effects of SF's changes are still felt in the backstory.
Art Dankwalther: He had a full plot cycle. He got his cash, we saw him become a Threat as he started picking apart corporations as practice, and then he forced Novatech to open the IPO which set up the whole System Failure stuff to begin with. Out of Dankwalther you get the Crash 2.0, Novatech becoming NeoNET, and the wireless changeover which was probably going to happen in a couple of IC years anyway since the whole Wireless Matrix Initiative was in its beginning stages.
Cross: That whole AAA was going nowhere anyway. It was tiny and its only major boogeyman was the Seraphim, part of which still survives in several factions.
Deus/Pax: Well Deus might have gotten the shaft in his ending, but A) he had a whole major plotline in end of 2nd/beginning of 3rd anyway with the whole Shutdown.... And to be honest? I've combed through SF to write this and you NEVER get a full bit on what happens to Deus or Pax, meaning they could very well still be around.
Poland: That plot was minor and was probably going to get resolved within a few years.
Ibn Eisa: I'm convinced that considering that whole idea was created before 9/11, in retrospect there was someone who felt the whole thing was a bit awkward anyway, so it was written out neatly when they could.
Winternight: Well, to be honest this was about the best sort of thing that something like Winternight would hope for anyway, a global chance to end the world. THey didn't end it, but they still changed stuff. And though they were largely written out with the mention in the S-K section of Corp Guide that their last HQ was nuked, they could still be out there.
Second American Revolution: This one. This one I'll agree went stillborn. It went as a decent story thread in Threats 2 but flat out petered out. All it really did was get Haffener dead, Daviar missing, and Colloton as President.
So there we go. Some of the plots that died were from Threats 2. Others were minor parts of YotC or Shadows of Europe. I'd say the only really long-term plots that ended in System Failure was Deus, Winternight (and they didn't really get much press other than the original Threats anyway), and Art Dankwalther. And some of them only got ambiguous endings anyway, so you could pull what you want and extend it.